rs900327 chr3:45611944 G>A

Sequence
ggagaggcatctctgcccaaattt[G/A]tagccagagagcagaggaagtgaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -0.34 1.86 1.002.2·10-3 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  obesity with early age of onset (age >2),  otosclerosis
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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