rs902174 chr4:184734017 C>T
- Sequence
tcccgagggtcggcagtacttacc[C/T]ctcagacctgtgaggccgcggccg
- ASB in cell types
- SUM159PT (Triple negative breast cancer) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN CRTC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.60 | -0.56 | 1.33 | n/a | No Hit | |||
| CRTC2_HUMAN | 1.70 | -1.14 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP partial epilepsy, serum creatinine, stabilized warfarin dose, total cholesterol, triglycerides change with statins, visceral leishmaniasis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Vagina, Whole_Blood