rs904539 chr17:27333163 T>C
- Sequence
gggggaagactgggagagaaatcg[T/C]caccccctagagggcaagtgggct
- ASB in cell types
- neutrophils from periferal blood HUVEC-C (HUVEC, umbilical vein endothelial cells) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- ZN341_HUMAN RAD21_HUMAN SUH_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN341_HUMAN | n/a | 0.92 | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.67 | 1.48 | 2.10 | n/a | n/a | |||
| SUH_HUMAN | -1.94 | 2.89 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.63 | 2.03 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), hdl cholesterol, height, microalbuminuria, schizophrenia, urinary albumin-to-creatinine ratio