rs906231 chr10:30542525 G>A
- Sequence
atttcaccatttcttcaacatcac[G/A]tggggtaccatgacattgacttcc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) breast tumor ER+ breast tumor
- ASB for transcription factors
- MGAP_HUMAN PRGR_HUMAN PPARG_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | 3.42 | n/a | 2.00 | -3.21 | Concordant | |||
| PRGR_HUMAN | 3.12 | n/a | 2.00 | 2.69 | Discordant | |||
| PPARG_HUMAN | 2.49 | -2.68 | 1.75 | n/a | No Hit | |||
| RAD51_HUMAN | 2.37 | -1.26 | 1.50 | n/a | n/a | |||
| NF2L1_HUMAN | 2.47 | -2.13 | 1.00 | n/a | No Hit |
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Motif analysis
