rs909234 chr14:76870361 C>T

Sequence
ggggccaccttctgcttttagtga[C/T]caccaggggacatgtcaatgcagc
ASB in cell types
GM02610 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -1.72 1.88 1.001.1·10-7 1.17 -3.50 Discordant
STAG1_HUMAN -2.33 2.39 1.001.7·10-5 1.17 n/a n/a
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Heart_Atrial_Appendage,  Nerve_Tibial,  Ovary,  Thyroid

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