rs910897 chr20:18005414 C>T
- Sequence
agttagtggatgaatagcccagca[C/T]gggacaaccctggggcaggttctg
- ASB in cell types
- LHSAR (prostate epithelial cells) GM01310 ( Transformed lymphovlasoid cell line ) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN AHR_HUMAN PAX2_HUMAN NANOG_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.85 | -0.30 | 1.50 | n/a | No Hit | |||
| AHR_HUMAN | 1.77 | -0.90 | 1.00 | n/a | No Hit | |||
| PAX2_HUMAN | 1.22 | -1.95 | 1.50 | n/a | No Hit | |||
| NANOG_HUMAN | -0.47 | 2.21 | 1.50 | n/a | No Hit | |||
| AP2A_HUMAN | 2.19 | 0.40 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood