rs910902 chr20:17968809 C>T
- Sequence
ctagagaaagaccgcgtttcggtg[C/T]ggggggaatttattactcagcccg
- ASB in cell types
- HEK293T (embryonic kidney) 22RV1 (prostate carcinoma) CD14+ monocytes brain prefrontal cortex region tissues
- ASB for transcription factors
- ZFX_HUMAN RBBP5_HUMAN STAT1_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.36 | n/a | 2.33 | n/a | No Hit | |||
| RBBP5_HUMAN | 1.79 | n/a | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.78 | 0.54 | 2.20 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.65 | n/a | 3.00 | n/a | No Hit | |||
| OLIG2_HUMAN | 2.20 | -0.23 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis