rs916850 chr5:137304359 A>T
- Sequence
gcttgccaataaacctgtgtaaac[A/T]gcagctcacaagccctgccccagc
- ASB in cell types
- LNCaP (prostate carcinoma) breast tumor primary prostate cancer 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN ESR1_HUMAN ATOH1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.87 | -0.35 | 1.55 | -4.87 | Concordant | |||
| ANDR_HUMAN | 1.09 | -0.17 | 1.43 | -2.20 | Concordant | |||
| ESR1_HUMAN | 3.29 | -0.15 | 2.00 | n/a | No Hit | |||
| ATOH1_HUMAN | 2.42 | -1.96 | 1.00 | -3.82 | Concordant |
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Motif analysis
