rs919433 chr2:197301841 G>A

Sequence
ctttgtcctgttatctatatctta[G/A]ccacatgtaagttttggtttttaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -0.17 1.95 1.000.05 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI intracranial, abdominal aortic or thoracic aortic aneurysm (pleiotropy)
GRASP body mass index (bmi),  hdl cholesterol,  infant head circumference,  refractive error
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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