rs920697 chr8:26579560 C>T

Sequence
gacgctctttggttctggttttcc[C/T]tttagccatgggcaccccggcttc
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) macrophages form periferal blood
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.36 1.78 1.006.8·10-3 1.40 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  obsessive-compulsive disorder (ocd),  recurrent early onset major depressive disorder (males)
GTEx eQTL Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis

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