rs921712 chr2:69789971 G>T
- Sequence
tattaagacccactgttttactgg[G/T]gcccactgtgtaaatgtgaagttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Mutu-1 (Epstein-Barr virus-related Burkitt lymphoma)
- ASB for transcription factors
- ZN692_HUMAN IKZF2_HUMAN COE1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN692_HUMAN | 2.76 | -2.64 | 1.00 | -4.98 | Concordant | |||
| IKZF2_HUMAN | 1.71 | -0.62 | 1.00 | n/a | n/a | |||
| COE1_HUMAN | 2.44 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood