rs921968 chr2:218407571 G>T

Sequence
atgcaggagggggtagattatgca[G/T]atctatggccagaccaagggagtg
ASB in cell types
CD34+ hematopoietic stem cells-derived proerythroblasts MDM(monocyte derived macrophages)
ASB for transcription factors
GATA1_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA1_HUMAN -1.94 2.89 1.004.7·10-5 2.00 n/a No Hit
SPI1_HUMAN 1.29 -0.02 3.9·10-31.00 1.39 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

EMBL-EBI mean corpuscular hemoglobin,  mean corpuscular hemoglobin concentration
GRASP acute lung injury following major trauma,  amyotrophic lateral sclerosis (als),  body mass index (bmi),  height,  hip bone mineral density (bmd),  neuroblastoma (brain cancer),  premature ovarian failure,  rheumatoid arthritis,  spine bone mineral density (bmd),  transmission distortion,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

Download