rs922483 chr8:11494403 C>T

Sequence
ctgatcgcagaccgggggtgctgc[C/T]acctctgtctgctgccggcagaaa
ASB in cell types
MS-1 (Small cell lung carcinoma) GM02610 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.68 -1.40 2.6·10-191.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI rheumatoid arthritis (acpa-positive)
GRASP height,  kawasaki disease,  rheumatoid arthritis,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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