rs924140 chr7:45923515 C>T
- Sequence
ataacaatgttttatatagattgc[C/T]atcacctttatcatgacatcttgc
- ASB in cell types
- 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- HXB13_HUMAN GATA3_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HXB13_HUMAN | n/a | 3.94 | 2.00 | n/a | No Hit | |||
| GATA3_HUMAN | -0.29 | 2.88 | 2.12 | n/a | No Hit | |||
| ANDR_HUMAN | -0.44 | 1.96 | 1.88 | 1.10 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, diastolic blood pressure (dbp), height, infant head circumference, parkinsons disease, salmonella-induced pyroptosis
GTEx eQTL Artery_Aorta, Brain_Cerebellum, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid