rs9257148 chr6:28764032 T>C

Sequence
atctcttccttagagtttttaaaa[T/C]tgtggtctccacactggtgcataa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
PRD10_HUMAN E4F1_HUMAN CEBPB_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRD10_HUMAN n/a 1.80 1.005.8·10-6 3.00 n/a n/a
E4F1_HUMAN n/a 3.05 1.002.9·10-4 3.00 n/a No Hit
CEBPB_HUMAN n/a 1.87 1.003.1·10-4 3.00 n/a No Hit
KDM1A_HUMAN n/a 1.85 1.006.3·10-4 3.00 n/a n/a
FOXK2_HUMAN n/a 3.05 1.006.6·10-4 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP barnes akathisia rating scale,  body mass index (bmi),  height,  ldl cholesterol change with statins,  refractive error,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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