rs9257149 chr6:28764148 T>C
- Sequence
gcaatctcggctcgcggcaacttc[T/C]gcctccccggctcagtggatcctc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN ATF4_HUMAN CEBPG_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.21 | 1.44 | 3.00 | 1.82 | Weak Concordant | |||
| ATF4_HUMAN | n/a | 2.57 | 3.00 | n/a | No Hit | |||
| CEBPG_HUMAN | n/a | 2.17 | 3.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 0.63 | 1.31 | 3.00 | n/a | n/a | |||
| TIF1A_HUMAN | n/a | 2.39 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood