rs9257316 chr6:28881380 T>C
- Sequence
gtgtgctatataagcatctgtctt[T/C]ggcggttggccgcgtggcctaatg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes VCaP (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN ARI1B_HUMAN BRD4_HUMAN ZN217_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.33 | -1.58 | 1.75 | n/a | No Hit | |||
| ARI1B_HUMAN | n/a | 2.16 | 3.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.41 | 0.55 | 1.44 | n/a | n/a | |||
| ZN217_HUMAN | 2.56 | -2.23 | 1.00 | n/a | n/a | |||
| TERT_HUMAN | 1.89 | -1.56 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood