rs9260736 chr6:29965032 C>T
- Sequence
taaaggttactgctgagtcatttc[C/T]gcagagctgcctgtttttgcagac
- ASB in cell types
- A549 (lung carcinoma) MOLM14 (Adult acute myeloid leukemia) SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) MOLM-13(acute monocytic leukemia(AML), Homo sapiens)
- ASB for transcription factors
- CDK8_HUMAN REQU_HUMAN JUN_HUMAN SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK8_HUMAN | 1.60 | n/a | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 2.94 | -5.17 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.31 | -0.09 | 1.00 | n/a | No Hit | |||
| SIN3A_HUMAN | 2.05 | -1.75 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, college completion, ldl cholesterol, rheumatoid arthritis, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood