rs9260759 chr6:29967595 C>T
- Sequence
taaaagaacttgtaacacaaaccc[C/T]accccttgagttcacagttcacca
- ASB in cell types
- ESO-26 (Gastroesophageal junction adenocarcinoma) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- KLF5_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KLF5_HUMAN | 2.75 | -2.55 | 1.00 | -2.99 | Concordant | |||
| CDK8_HUMAN | 1.76 | -0.53 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, coronary artery disease (cad), cystatin c in serum, height, rheumatoid arthritis, tardive dyskinesia, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood