rs9261133 chr6:30013410 T>C
- Sequence
tgtcagtaagacctgagctgcagg[T/C]tgaatccaggccacttggctacag
- ASB in cell types
- GM18505 (female B-cells Lymphoblastoid Cell Lines) A549 (lung carcinoma) GM02610 (Lymphoblastoid Cell Lines) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.82 | 0.78 | 1.77 | n/a | No Hit | |||
| STAG1_HUMAN | 2.50 | -0.30 | 2.46 | n/a | n/a | |||
| RAD21_HUMAN | -0.18 | 1.32 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -0.68 | 1.10 | 1.00 | n/a | n/a |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, height, obesity with early age of onset (age >2), rheumatoid arthritis, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood