rs9262217 chr6:30822142 G>A

Sequence
tttggccaccagatggcataactg[G/A]gctcattaagataaacaaagagaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
CTCF_HUMAN NFIC_HUMAN MNT_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.20 2.45 1.001.2·10-9 2.34 n/a No Hit
NFIC_HUMAN n/a 3.40 1.008.0·10-3 3.00 n/a No Hit
MNT_HUMAN -0.95 1.96 1.000.02 3.00 n/a No Hit
HDAC1_HUMAN -0.97 2.19 1.000.03 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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