rs926271 chr1:11909860 A>G
- Sequence
aaaattggtttaaaactcagaatt[A/G]ttcctctccacggaaatctttagt
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- RFOX2_HUMAN ZN395_HUMAN ELL2_HUMAN MED26_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 2.05 | 0.17 | 1.33 | n/a | n/a | |||
| ZN395_HUMAN | 2.31 | -2.14 | 1.00 | n/a | n/a | |||
| ELL2_HUMAN | 1.86 | n/a | 3.00 | n/a | n/a | |||
| MED26_HUMAN | 1.63 | -3.25 | 1.50 | n/a | n/a | |||
| MBD4_HUMAN | 1.40 | -0.33 | 1.08 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Testis, Whole_Blood