rs9264672 chr6:31271989 C>T

Sequence
gcagaggccgcttccctcccaacc[C/T]cgcactcacaggcccaggtctcgg
ASB in cell types
HCT-116 (colon carcinoma) K562 (myelogenous leukemia)
ASB for transcription factors
MBD4_HUMAN E2F1_HUMAN TEAD1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MBD4_HUMAN 2.67 -2.26 3.4·10-81.00 1.00 n/a n/a
E2F1_HUMAN n/a 2.95 1.000.03 3.00 n/a No Hit
TEAD1_HUMAN 1.54 -0.55 0.051.00 1.00 n/a No Hit
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GRASP birth weight,  cystatin c in serum,  fasting insulin,  homa-ir,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

Download