rs9267954 chr6:32245275 A>T
- Sequence
tttctgagacccgctgctttagag[A/T]agatttctggagcagagatttgga
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.73 | 0.50 | 1.32 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, height, homa-ir, irritible bowel syndrome, ldl cholesterol change with statins, lp-pla2 activity, multiple sclerosis, parkinsons disease, rheumatoid arthritis, rheumatoid arthritis (acpa-positive), rheumatoid arthritis, combined control dataset, serum creatinine, total cholesterol change with statins, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood