rs9268832 chr6:32460012 T>C
- Sequence
cgcgcatactccttccggtgtgga[T/C]gagtctctgcacaaaccgcatccg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN ZN444_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | n/a | 2.24 | 2.75 | n/a | n/a | |||
| IKZF2_HUMAN | n/a | 1.79 | 3.00 | n/a | n/a | |||
| ZN444_HUMAN | 1.85 | -1.63 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -0.32 | 2.35 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP abdominal aortic aneurysm, adult asthma, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, alopecia areata, asthma, comorbid depressive syndrome and alcohol dependence, coronary artery disease (cad), crohns disease, follicular lymphoma (cancer), hdl cholesterol, height, idiopathic membranous nephropathy, infant head circumference, ldl cholesterol, longstanding arthritis, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), mitral annular calcium, multiple sclerosis, rheumatoid arthritis, sarcoidosis, serum creatinine, spine bone mineral density (bmd), total cholesterol, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood