rs9275369 chr6:32700478 C>T
- Sequence
tcaaacaaaagcagactttaactc[C/T]tgctccagccatgcttctttgctt
- ASB in cell types
- neural cell GM19238 (female B-cells lymphoblastoid cell lines) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN SMC3_HUMAN CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.43 | -1.81 | 2.30 | n/a | n/a | |||
| SMC3_HUMAN | 1.70 | -1.70 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.13 | 0.35 | 2.06 | n/a | No Hit | |||
| RAD21_HUMAN | 1.69 | -0.65 | 1.50 | n/a | n/a | |||
| CEBPG_HUMAN | 2.97 | n/a | 3.00 | 3.58 | Discordant |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood