rs9275371 chr6:32700519 T>C
- Sequence
ctttgcttctcaaacatccaaaac[T/C]gcatctcagattgcatcatattct
- ASB in cell types
- neural cell GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN TRI22_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.28 | 0.10 | 1.77 | n/a | No Hit | |||
| SMC3_HUMAN | 1.48 | -1.48 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.35 | 0.24 | 1.87 | n/a | n/a | |||
| TRI22_HUMAN | 2.13 | -1.66 | 1.00 | n/a | n/a | |||
| ZN143_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), crohns disease, cystatin c in serum, hdl cholesterol, height, joint damage severity in rheumatoid arthritis, ldl cholesterol, parkinsons disease, parkinsons disease (pd), rheumatoid arthritis, rheumatoid arthritis (acpa-positive), sarcoidosis, serum creatinine, stabilized warfarin dose, systemic sclerosis, tetrology of fallot, total cholesterol, transmission distortion, triglycerides, type 1 diabetes, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood