rs9275372 chr6:32700611 C>T
- Sequence
taccaccctcaaggaatcctgacc[C/T]ctcaaatccagacctgccaagggg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) THP-1 (acute monocytic leukemia) foreskin keratinocyte GM02630 (Fanconi anemi)
- ASB for transcription factors
- STAG1_HUMAN RAD21_HUMAN ZN143_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.61 | -0.58 | 1.38 | n/a | n/a | |||
| RAD21_HUMAN | 0.23 | 1.18 | 1.87 | n/a | n/a | |||
| ZN143_HUMAN | 2.94 | -3.02 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.38 | 1.91 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood