rs9275374 chr6:32700749 C>T
- Sequence
acagctgtccatgtcctcctaaaa[C/T]aagaaccttgaacttcttccagta
- ASB in cell types
- THP-1 (acute monocytic leukemia) foreskin keratinocyte GM19239 (male B-cells lymphoblastoid cell line) uterus
- ASB for transcription factors
- RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.29 | 0.92 | 1.92 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP crohns disease, ldl cholesterol, parkinsons disease (pd), primary biliary cirrhosis, sarcoidosis, stabilized warfarin dose, systemic sclerosis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood