rs9277727 chr6:33123884 T>C
- Sequence
caaggtgcctgatgaagaggattt[T/C]tatttccactaggtggtgctgttg
- ASB in cell types
- liver NB69 (neuroblastoma) GM12892 (female B-cells lymphoblastoid cell line) hASC (preadipocytes)
- ASB for transcription factors
- SMCA4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 1.01 | 1.44 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Nerve_Tibial, Thyroid