rs9290085 chr3:161488317 C>A
- Sequence
tgccacacacaaaagaaatgggtt[C/A]tatgctccaatctcttgactctga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD51_HUMAN IKZF1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 2.74 | -2.62 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.47 | n/a | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.17 | -1.74 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, college completion, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis