rs9295886 chr6:30453620 C>T
- Sequence
gggcgcacagtatgtctgtggggt[C/T]acgcagacctgggaaccagatctt
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM17942 (lymphoblastoid cell) GM18505 (female B-cells Lymphoblastoid Cell Lines) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.21 | 0.09 | 1.84 | n/a | No Hit | |||
| STAG1_HUMAN | 1.42 | -0.16 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol change with statins, rheumatoid arthritis, total cholesterol change with statins, vitiligo
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood