rs9296144 chr6:35260438 G>T

Sequence
cctcagtatctttatcctgtagcc[G/T]tatgaccctcgttccacgtctgcc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
ASB for transcription factors
PKNX1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN -2.19 2.58 1.002.3·10-3 1.00 n/a No Hit
ANDR_HUMAN -1.12 2.19 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  hdl cholesterol,  height,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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