rs9297548 chr8:115969713 T>C

Sequence
gtcctgatgtcaacagagtcctgg[T/C]gccaatgcctatttcctcattgtt
ASB in cell types
T47D (invasive ductal carcinoma) MDA-MB-231 (breast adenocarcinoma)
ASB for transcription factors
FOXA1_HUMAN PRGR_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.36 1.37 1.002.1·10-7 1.57 n/a No Hit
PRGR_HUMAN -0.27 1.85 1.007.3·10-6 1.28 n/a No Hit
BRD4_HUMAN 0.04 1.91 1.002.6·10-3 1.57 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  irritible bowel syndrome,  late onset alzheimers disease,  total cholesterol change with statins,  triglycerides
GTEx eQTL Pancreas

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