rs930227 chr19:45995641 C>T
- Sequence
gtaggaatcgggagggagggtgcc[C/T]tttaacaagggtaggcgcttgatt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MNT_HUMAN KDM1A_HUMAN ILF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.19 | 2.34 | 1.90 | n/a | No Hit | |||
| KDM1A_HUMAN | -1.34 | 1.97 | 2.00 | n/a | n/a | |||
| ILF3_HUMAN | -1.03 | 1.93 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Stomach, Thyroid, Whole_Blood