rs93075 chr17:77374386 T>G
- Sequence
gtgcgtgcgctttcctgcgtcctc[T/G]tgactgccggtgctggggctctgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) renal cortex CD14+ monocytes Th1-cells
- ASB for transcription factors
- CREB1_HUMAN STAT1_HUMAN ZNF10_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -1.97 | 2.47 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | -1.55 | 2.44 | 3.00 | n/a | No Hit | |||
| ZNF10_HUMAN | n/a | 1.54 | 2.00 | n/a | No Hit | |||
| TBX21_HUMAN | 0.46 | 2.10 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hypertension (early onset hypertension), ldl cholesterol, total cholesterol, triglycerides
GTEx eQTL Artery_Aorta, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Ovary, Thyroid, Whole_Blood