rs934232 chr2:43192354 T>C
- Sequence
cccccagacctccagtcctcagag[T/C]cccctgtaggaggcagcacgggga
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.39 | 0.15 | 1.48 | -0.35 | Weak Concordant | |||
| STAG1_HUMAN | 1.85 | -1.30 | 1.39 | n/a | n/a | |||
| SMCA5_HUMAN | 2.69 | -2.43 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, diastolic blood pressure (dbp), ldl cholesterol, serum creatinine, total cholesterol