rs934615 chr2:25362215 C>T
- Sequence
agtctcgctttcttttctccttcc[C/T]ggcagggctagggaggggacccag
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- GABP1_HUMAN FOXK2_HUMAN NRF1_HUMAN NC2A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | -1.94 | 2.35 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | -0.65 | 3.11 | 1.88 | n/a | No Hit | |||
| NRF1_HUMAN | 0.09 | 1.32 | 1.85 | n/a | No Hit | |||
| NC2A_HUMAN | n/a | 2.20 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | -0.54 | 2.32 | 2.00 | n/a | n/a |
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Motif analysis
