rs934722 chr2:120252867 A>T

Sequence
ggggggtgggaaagcgagcccggc[A/T]gctcaatgacaaatcggtggagga
ASB in cell types
CD14+ monocytes
ASB for transcription factors
PATZ1_HUMAN PKNX1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PATZ1_HUMAN 2.79 -2.52 4.2·10-31.00 1.00 n/a No Hit
PKNX1_HUMAN 1.54 -1.30 5.9·10-31.00 1.50 n/a No Hit
STAT1_HUMAN -1.08 2.05 1.000.03 1.50 -0.85 Weak Discordant
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Motif analysis

STAT1_HUMAN Weak Discordant
STAT1_HUMAN pic

Genetic associations

GRASP breast size (bra cup size in women)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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