rs939269 chr8:27323939 T>A
- Sequence
cacaggggcagcacacacaaactc[T/A]ccttttcttaaacaggtcttgatt
- ASB in cell types
- A549 (lung carcinoma) neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line) erythroid progenitors
- ASB for transcription factors
- STAT1_HUMAN STAG1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -0.83 | 2.12 | 2.00 | -3.83 | Discordant | |||
| STAG1_HUMAN | 0.25 | 0.09 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -1.86 | 2.31 | 1.00 | n/a | No Hit |
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Motif analysis
