rs942348 chr13:27504010 C>T

Sequence
cagaagccctgaaatcaaccagac[C/T]gggtcaaagaggctctgtgctggc
ASB for transcription factors
RARA_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 1.76 -0.70 0.041.00 1.00 -0.93 Weak Concordant
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Motif analysis

RARA_HUMAN Weak Concordant
RARA_HUMAN pic

Genetic associations

GRASP hdl cholesterol change with statins,  height,  ldl cholesterol,  schizophrenia,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Heart_Left_Ventricle,  Thyroid

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