rs943534 chr9:70258870 G>A
- Sequence
ccctcagtctgggcctcgcacagc[G/A]cggcggagcgcgggaggggcgggg
- ASB in cell types
- HCT-116 (colon carcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MAX_HUMAN STAT1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 1.57 | -0.49 | 1.10 | n/a | No Hit | |||
| STAT1_HUMAN | 2.52 | 0.16 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.15 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Liver, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis