rs943940 chr9:37986805 G>A

Sequence
tccccggggcccctgtgctgcaga[G/A]agccagggcccagcagggacttca
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ARNT_HUMAN IKZF1_HUMAN ZN687_HUMAN REQU_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARNT_HUMAN 3.96 n/a 8.2·10-71.00 2.00 n/a No Hit
IKZF1_HUMAN 3.09 -1.90 5.2·10-61.00 1.25 n/a n/a
ZN687_HUMAN 3.51 n/a 5.0·10-41.00 2.00 n/a n/a
REQU_HUMAN 2.83 -2.82 4.4·10-31.00 1.00 n/a n/a
COT1_HUMAN 2.27 -2.27 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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