rs944892 chr20:62327434 C>T

Sequence
tgggcacacacgtgtggctgcaca[C/T]gggtggatgcccacacatcacagg
ASB for transcription factors
PAX2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PAX2_HUMAN n/a 2.27 1.001.3·10-3 3.00 -1.27 Weak Discordant
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Motif analysis

PAX2_HUMAN Weak Discordant
PAX2_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  infant head circumference,  ldl cholesterol
GTEx eQTL Brain_Cerebellar_Hemisphere,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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