rs945630 chr1:92960784 G>T

Sequence
gtctccacctcccatttaaatctt[G/T]ggtgtgatggaacgacccaaccaa
ASB in cell types
OCI-LY7 (diffuse large B-cell lymphoma) 22RV1 (prostate carcinoma) primary B-CLL cells
ASB for transcription factors
ANDR_HUMAN FOXP1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.41 -1.22 4.8·10-31.00 2.00 n/a No Hit
FOXP1_HUMAN 2.63 n/a 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  mitral annular calcium,  rheumatoid arthritis
GTEx eQTL Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Testis,  Thyroid

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