rs945713 chr1:162165880 G>A

Sequence
cactcccatttggatatcccaaag[G/A]caccttaaattcaatatgtcaaaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.06 0.20 8.2·10-41.00 2.09 n/a No Hit
FOXA1_HUMAN 0.80 0.24 0.021.00 1.92 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP asthma,  body mass index (bmi),  infant head circumference,  microalbuminuria,  monocyte count,  qt interval,  systolic blood pressure (sbp)
GTEx eQTL Adrenal_Gland,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Testis,  Thyroid

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