rs945727 chr1:101971504 T>C
- Sequence
cacatctgagaacagccccacctg[T/C]tgacagatctttgatggcaaggct
- ASB in cell types
- EOL-1 (Acute myeloid leukemia) SK-N-SH (neuroblastoma) GM10847 (female B-cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.10 | 2.53 | 1.43 | 2.48 | Concordant | |||
| STAG1_HUMAN | -0.61 | 1.51 | 1.17 | n/a | n/a |
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Motif analysis
