rs945732 chr1:234779417 G>A
- Sequence
ggccaggaggtcctgccatcctcc[G/A]ggaacatgtgcccaggcagcaaga
- ASB in cell types
- HEK293T (embryonic kidney) HEK293 (embryonic kidney) J-Lat A72 MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZFX_HUMAN BRD4_HUMAN SMCA4_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 0.22 | 2.63 | 1.70 | n/a | No Hit | |||
| BRD4_HUMAN | -0.64 | 1.60 | 1.31 | n/a | n/a | |||
| SMCA4_HUMAN | -0.56 | 2.18 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -1.46 | 2.92 | 2.00 | 1.61 | Weak Concordant | |||
| RARA_HUMAN | -2.45 | 2.39 | 1.00 | n/a | No Hit |
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Motif analysis
