rs945959 chr20:35147102 G>C
- Sequence
ggatggacggaaagggaaaggacc[G/C]ggttcacgcttcccattccccaac
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) primary B-CLL cells BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.18 | 1.40 | 2.12 | n/a | No Hit | |||
| EGR1_HUMAN | 0.57 | 2.10 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, height, plasma protein-c levels, serum creatinine, total cholesterol, triglycerides, waist hip ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood