rs947475 chr10:6279590 C>T
- Sequence
gtttgctgtctgtgtgcctggggt[C/T]acgtttgggggaatgtctctccgt
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- SMAD4_HUMAN ETV5_HUMAN NR2F6_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD4_HUMAN | 2.33 | n/a | 1.50 | n/a | No Hit | |||
| ETV5_HUMAN | 2.83 | -2.82 | 1.00 | n/a | No Hit | |||
| NR2F6_HUMAN | 1.87 | -1.08 | 1.25 | -1.80 | Weak Concordant | |||
| RARA_HUMAN | 0.86 | 0.40 | 1.04 | -3.76 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
